Home >
Taxonomic Refinement >
Data Refinement Workflow v17 >
Data Refinement Workflow v17 (v1) run 31 Jul 2015 08:50:29 UTC
Data Refinement Workflow v17 (v1) run 31 Jul 2015 08:50:29 UTC
Created at: 31 Jul 2015 08:50:33 UTC
Started at: N/A
Finished at: 31 Jul 2015 08:51:34 UTC
Outputs
Advanced
Taverna Server Log
Portal Log
undefined method `id' for true:TrueClass /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/bundler/gems/taverna-player-13729ab3c207/lib/taverna_player/worker.rb:62:in `perform' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/backend/base.rb:105:in `block in invoke_job' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `block in initialize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:38:in `run_callbacks' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/backend/base.rb:102:in `invoke_job' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:207:in `block (2 levels) in run' /usr/lib/ruby/1.9.1/timeout.rb:68:in `timeout' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:207:in `block in run' /usr/lib/ruby/1.9.1/benchmark.rb:295:in `realtime' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:206:in `run' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:274:in `block in reserve_and_run_one_job' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `block in initialize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:38:in `run_callbacks' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:274:in `reserve_and_run_one_job' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:190:in `block in work_off' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:189:in `times' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:189:in `work_off' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:154:in `block (4 levels) in start' /usr/lib/ruby/1.9.1/benchmark.rb:295:in `realtime' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:153:in `block (3 levels) in start' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `block in initialize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:38:in `run_callbacks' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:152:in `block (2 levels) in start' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:151:in `loop' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:151:in `block in start' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/plugins/clear_locks.rb:7:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/plugins/clear_locks.rb:7:in `block (2 levels) in <class:ClearLocks>' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:78:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:78:in `block (2 levels) in add' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:60:in `block in initialize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:78:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:78:in `block in add' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:65:in `execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/lifecycle.rb:38:in `run_callbacks' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/worker.rb:150:in `start' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:104:in `run' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:92:in `block in run_process' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/application.rb:255:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/application.rb:255:in `block in start_proc' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/daemonize.rb:82:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/daemonize.rb:82:in `call_as_daemon' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/application.rb:259:in `start_proc' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/application.rb:296:in `start' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/controller.rb:70:in `run' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons.rb:197:in `block in run_proc' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/cmdline.rb:109:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons/cmdline.rb:109:in `catch_exceptions' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/daemons-1.1.9/lib/daemons.rb:196:in `run_proc' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:90:in `run_process' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:83:in `block in daemonize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:81:in `times' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/delayed_job-4.0.2/lib/delayed/command.rb:81:in `daemonize' /opt/BioVeLPortal/lib/seek/workers.rb:20:in `block in start' /opt/BioVeLPortal/lib/seek/workers.rb:20:in `map' /opt/BioVeLPortal/lib/seek/workers.rb:20:in `start' /opt/BioVeLPortal/lib/tasks/seek_workers.rake:11:in `block (3 levels) in <top (required)>' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:240:in `call' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:240:in `block in execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:235:in `each' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:235:in `execute' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:179:in `block in invoke_with_call_chain' /usr/lib/ruby/1.9.1/monitor.rb:211:in `mon_synchronize' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:172:in `invoke_with_call_chain' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/task.rb:165:in `invoke' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:150:in `invoke_task' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:106:in `block (2 levels) in top_level' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:106:in `each' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:106:in `block in top_level' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:115:in `run_with_threads' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:100:in `top_level' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:78:in `block in run' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:176:in `standard_exception_handling' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/lib/rake/application.rb:75:in `run' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/gems/rake-10.3.2/bin/rake:33:in `<top (required)>' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/bin/rake:19:in `load' /opt/BioVeLPortal/vendor/bundle/ruby/1.9.1/bin/rake:19:in `<main>'